In preparation
| 58 Distributed protection enhances antimicrobial tolerance in spatially structured synthetic biofilm communities Jin X, Riedel-Kruse IH* submitted (2024). |
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| 57 Flagellar beat state switching in microswimmers to select between positive and negative phototaxis Tsang A*, Riedel-Kruse IH* submitted (2024). (BioRxiv) |
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| 56 Structure, motion, and multiscale search of traveling networks Cira NJ*, Paull ML, Sinha S, Zanini F, Ma EY, Riedel-Kruse IH* in revision (2024). (BioRxiv) |
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| 55 Versatile Deployment of Interactive Biology Cloud Labs in Schools through Teacher Driven Curricula Design Ahmed, TH, Bumbacher E, Blikstein P, Riedel-Kruse IH* under review (2024). |
Published
| 54 Biophysical characterization of synthetic adhesins for predicting and tuning engineered living material properties Costan SA, Ryan PM, Kim H, Wolgemuth C, Riedel-Kruse IH* Matter (2024) 7 1-19. (pdf) (journal) |
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| 53 Field Guide to Traction Force Microscopy Denisin AK, Kim H, Riedel-Kruse IH, Pruitt BL* Cellular and Molecular Bioengineering (2024). (pdf) (journal) |
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| 52 Converting Methane into Electricity and Value Chemicals at Scale via Anaerobic Microbial Fuel Cells Wood T*, Gurgan I, Howley ET, Riedel-Kruse IH* Renewable and Sustainable Energy Reviews (2023) 188 113749. (pdf) (journal) |
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| 51 4-bit adhesion logic enables universal multicellular interface patterning Kim H, Skinner DJ, Glass DS, Hamby AE, Stuart BAR, Dunkel J, Riedel-Kruse IH* Nature (2022) 608, 324–329. (pdf) (journal) See also News & Views. Selected for the journal Cover. |
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| 50 DIY Liquid Handling Robots for Integrated STEM Education and Life-Science Research Li E, Lam AT, Fuhrmann T, Erickson L, Wirth M, Miller ML, Blikstein P, Riedel-Kruse IH* PLoS ONE 17(11): e0275688 (2022). (pdf) (journal). |
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| 49 Micro-HBI: Human-Biology Interaction with Living Cells, Viruses, and Molecules Lee SA*, Riedel-Kruse IH* Front. Comput. Sci. (2022) 4, 849887. (pdf) (journal) |
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| 48 Scientific Inquiry in Middle Schools by combining Computational Thinking, Wet Lab Experiments, and Liquid Handling Robots Fuhrmann T, Ahmed DI, Erikson L, Wirth M, Miller ML, Li E, Lam AT, Blikstein P, Riedel-Kruse IH* Proceedings of the 20th ACM Conference on Interaction Design and Children (2021) (pdf) (journal). |
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| 47 Nonlinear delay differential equations and their application to modeling biological networks Glass D, Jin X, Riedel-Kruse IH* Nature Communications (2021) 12, 1788. (pdf) (journal) |
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| 46 Engineering and modeling of spatio-temporal patterns and morphologies in multicellular systems Kim H, Jin X, Glass D, Riedel-Kruse IH* Current Opinion in Genetics & Development (2020) 63, 95. (pdf) (journal) |
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| 45 Pac-Euglena: A living cellular Pac-Man meets virtual ghosts Lam A, Griffin J, Loeun M, Cira N, Lee SA, Riedel-Kruse IH* Proceedings of the 38rd Annual ACM Conference on Human Factors in Computing Systems (2020) 251. (pdf) (journal) |
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| 44 First-hand, immersive full-body experiences with living cells through interactive museum exhibits Lam AT, Ma J, Barr C, Lee SA, White A, Yu K, Riedel-Kruse IH* Nature Biotechnology (2019) 37, 1238. (pdf) (journal) |
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| 43 Scientific Discovery Games for Biomedical Research. Das R*, Washington P, Keep B, Riedel-Kruse IH* Annual Reviews Biomedical Data Science (2019) Vol. 2, 2019, pp. 253–279. (pdf) (journal) |
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| 42 Classroom on a Chip: Taking Microfluidics from the Laboratory into the Classroom Rackus DG, Riedel-Kruse IH*, Pamme N* Biomicrofluidics (2019) 13, 041501. (pdf) (journal) |
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| 41 Interactive programming paradigm for real-time experimentation with remote living matter Washington P, Samuel-Gama KG, Goyal S, Ramaswamia A, Riedel-Kruse IH* PNAS (2019) 19, 2019 116 (12) 5411-5419. (pdf) (journal) |
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| 40 Molecular Motors in Materials Science Hess H, Katira P, Riedel-Kruse IH, Tsitkov, S Materials Research Society Bulletin (2019) 44(2), 113-118. doi:10.1557/mrs.2019.19 (pdf) (journal) |
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| 39 High-resolution Patterned Biofilm Deposition Using pDawn-Ag43 Jin X, Riedel-Kruse IH* J. Vis. Exp. (140), e58625, doi:10.3791/58625 (2018). (pdf) (journal) |
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| 38 Regulation of epithelial migration by epithelial cell adhesion molecule requires its Claudin-7 interaction domain Barth A, Kim H, Riedel-Kruse IH* PLoS ONE 13(10): e0204957 (2018). (pdf) (journal) |
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| 37 Polygonal motion and adaptable phototaxis via flagellar beat switching in the microswimmer Euglena gracilis Tsang A, Lam A, Riedel-Kruse IH* Nature Physics 14, 1216-1222 (2018). (pdf) (journal) See also News & Views. |
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| 36 A genetically encoded adhesin toolbox for programming multicellular morphologies and patterns Glass D, Riedel-Kruse IH* Cell 174 (3), 649-658, (2018). (pdf) (journal) David then co-authored a perspective in Science on composability accross scales in synthetic biology. |
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| 35 Biofilm Lithography enables high-resolution cell patterning via optogenetic adhesin expression Jin X, Riedel-Kruse IH* PNAS (2018) 115 (14) 3698-3703. (pdf) (journal) Selected for the journal cover. |
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| 34 Affordances of Digital, Textile and Living Media for Designing and Learning Biology in K-12 Education Kafai Y, ..., Washington P, Riedel-Kruse, IH., ... Anderson Proceedings of the 13th international conference of learning sciences. ISLS. London, UK. pp. 1275 - 1282 (2018). (pdf) |
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| 33 Design Matters: The Impact of Technology Design on Students’ Inquiry Behaviors Bumbacher E, Hossain Z, Riedel-Kruse IH*, Blikstein P.* Proceedings of the 13th international conference of learning sciences. ISLS. London, UK. pp. 839 - 846 (2018). (pdf) |
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| 32 Life-Science Experiments Online: Technological Frameworks and Educational Use Cases Hossain Z, Riedel-Kruse IH* Review in book "Cyber-Physical Laboratories in Engineering and Science Education" (2018). (pdf) (publisher) |
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| 31 Design Guidelines and Empirical Case Study for Scaling Authentic Inquiry-based Science Learning via Open Online Courses and Interactive Biology Cloud Labs Hossain Z, Bumbacher E, Brauneis A, Diaz M, Saltarelli A, Blikstein P, Riedel-Kruse IH.* International Journal of Artificial Intelligence in Education, 1-30, 2017. (pdf) (journal) Top 3 read article in 2018 |
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| 30 Stem Cell Scaling during Adult Organ Resizing Du X, O'Brien L*, Riedel-Kruse IH* Biophysical Journal 113(1) 174-184 (2017) (pdf) (journal) |
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| 29 Authentic Science Inquiry Learning at Scale Enabled by an Interactive Biology Cloud Experimentation Lab Hossain Z, Bumbacher E, Blikstein P, Riedel-Kruse IH* Proceedings of the Fourth (2017) ACM Conference on Learning@ Scale 237-240 (2017). (pdf) (journal) |
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| 28 Device and Programming Abstractions for Spatiotemporal Control of Active Micro-Particle Swarms Lam AT, Samuel-Gama KG, Griffin J, Loeun M, Gerber L, Hossain Z, Cira NJ, Lee SA, Riedel-Kruse IH* Lab on a Chip 17(8), 1441-1451 (2017). (pdf) (journal) Selected as Top 10% article / HOT article in Lab on a Chip |
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| 27 Liquid-handling Lego robots and experiments for STEM education and research Gerber LC, Calasanz-Kaiser A., Hyman L., Voitiuk K., Patil U., Riedel-Kruse IH.* PLoS Biology 15(3) (2017). (pdf) (journal) Build your own Lego pipetting robot (all instructions open source are here) to do your life-science experiments. |
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| 26 Incorporating a Commercial Biology Cloud Lab into Online Education Riedel-Kruse IH* 14th International Conference on Remote Engineering and Virtual Instrumentation. IEEE. (2017) (pdf) |
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| 25 Interactive and Scalable Biology Cloud Experimentation for Scientific Inquiry and Education Hossain Z, Bumbacher E, Chung AM, Honesty K, Walter A, Litton C, Pradhan S, Jona K, Blikstein P, Riedel-Kruse IH.* Nature Biotechnology 34(12) (2016). (pdf) (journal) Discussed in an earlier News Feature in Nature. |
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| 24 LudusScope: Accessible Interactive Smartphone Microscopy for Life-Science Education Honesty Kim, Seung Ah Lee, Lukas Gerber, Daniel Chiu, Sherwin Yuyang Xia, Nate Cira, Ingmar H. Riedel-Kruse* PLoS ONE 11(10): e0162602 (2016). (pdf) (journal). Build your own microscope (all instructions open source are here), interact with cells in realtime, play games, and explore. Featured in Nature. Among top 1% most downloaded PLoS one articles in 2016. |
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| 23 Interactive Biotechnology: Design Rules for Integrating Living Matter into Digital Games Lukas Gerber, Honesty Kim, Ingmar H. Riedel-Kruse* DiGRA/FDG Vol. 13 (2016). (pdf) (journal) |
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| 22 BioGraphr: Science Games on a Biotic Computer Gerber LC, Doshi M, Kim H, Ingmar H. Riedel-Kruse* DiGRA/FDG Vol. 13 (2016). (pdf) (journal) |
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| 21 On the General Analytical Solution of the Kinematic Cosserat Equations Dominik L. Michels*, Dmitry A. Lyakhov, Vladimir P. Gerdt, Zahid Hossain, Ingmar H. Riedel-Kruse, and Andreas G. Weber. Computer Algebra in Scientific Computing, CASC 2016, LNCS 9890, Springer, (2016). (pdf) (journal) |
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| 20 Signaling Delays preclude Defects in Lateral Inhibition Patterning David S. Glass, Xiaofan Jin, Ingmar H. Riedel-Kruse* Phys. Rev. Lett. 116, 128102 (2016). (pdf) (journal) |
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| 19 Microfluidic Assembly Kit based on laser-cut Building Blocks for Education and fast Prototyping Gerber LC, Kim H, Riedel-Kruse IH* Biomicrofluidics (2015) (pdf) (journal) |
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| 18 A Force Balance Can Explain Local and Global Cell Movements during Early Zebrafish Development Jack Chai, Andrea L. Hamilton, Michael Krieg, Craig D. Buckley, Ingmar H. Riedel-Kruse, Alexander R. Dunn Biophysical Journal (2015) (pdf) (journal) |
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| 17 Real-time and turn-based biology online experimentation Zahid Hossain, Alice M. Chung, Ingmar H. Riedel-Kruse* 12th International Conference on Remote Engineering and Virtual Instrumentation, pp. 86-89. IEEE. (2015). (journal) |
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| 16 Trap it! : A Playful Human-Biology Interaction for a Museum Installation Seung Ah Lee, Engin Bumbacher, Alice M. Chung, Nate Cira, Byron Walker, Ji Young Park, Barry Starr, Paulo Blikstein, and Ingmar H. Riedel-Kruse* Proceedings of the 33rd Annual ACM Conference on Human Factors in Computing Systems (2593). 2015 (pdf) (journal) (video) |
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| 15 Cloud Experimentation for Biology: Systems Architecture and Utility for Online Education and Research Zahid Hossain, Alice Chung, Nathan Orloff, Sean Choi, Stephen Koo, Cynthia Truong, Paulo Blikstein, and Ingmar H. Riedel-Kruse* Proceedings of the 33rd Annual ACM Conference on Human Factors in Computing Systems (3681). 2015 (pdf) (journal) (video) Honorable mention best paper award. See also earlier News Feature in Nature. |
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| 14 A Biotic Game Design Course Nate Cira, Alice Chung, Aleksandra K. Denisin, Stefano Rensi, Gabriel Sanchez, Stephen Quake, Ingmar H. Riedel-Kruse* PLoS Biology 2015 (pdf) (journal) (video) |
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| 13 Tangible interactive microbiology for informal science education Seung Ah Lee, Alice Chung, Nate Cira, Ingmar H. Riedel-Kruse* TEI'15 (2015) 273. (pdf) (journal) (video) top downloaded paper |
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| 12 Shape Mode Analysis Exposes Movement Patterns in Biology: Flagella and Flatworms as Case Studies Steffen Werner, Jochen C. Rink, Ingmar H. Riedel-Kruse, Benjamin M. Friedrich PLoS One (2014) 26;9(11):e113083. (pdf) (journal) |
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| 11 Row with the flow Benjamin M. Friedrich, Ingmar H. Riedel-Kruse eLife (2014);3:e03804. doi: 10.7554/eLife.03804.(pdf) (journal) |
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| 10 Active Phase and Amplitude Fluctuations of Flagellar Beating Rui Ma, Gary S. Klindt, Ingmar H. Riedel-Kruse, Frank Julicher, Benjamin M. Friedrich Phys. Rev. Lett. (2014) 113, 04810. (pdf) (journal) |
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| 9 Integrated imaging and bioprinting for scalable, networkable desktop experimentation Nathan D. Orloff, Cynthia Truong, Nathan Cira, Stephen Koo, Andrea Hamilton, Sean Choi, Ingmar H. Riedel-Kruse* RCS Advances (2014) DOI:10.1039/C4RA05932H (pdf) (journal) |
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| 8 Innocent fun or microslavery?: Public Responses to and Ethical Analysis of Biotic Games Hayden Harvey, Molly Havard, David Magnus, Mildred Cho, Ingmar H. Riedel-Kruse Hasting Center Report (2014); 44(6):38-46. doi: 10.1002/hast.386. (pdf) (journal) |
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| 7 Design, Engineering and Utility of Biotic Games Riedel-Kruse*, I.H., Chung, A.M., Dura, B., Hamilton, A.L., B.C. Lee Lab on a Chip (2011). 11, 14-22 (pdf) (journal) (viewpoint) (video) most viewed video ever on the Lab on a Chip channel; Significant secondary press in Science, Nature Biotechnology, ... |
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| 6 High-precision tracking of sperm swimming fine structure provides strong test of resistive force theory B. M. Friedrich, I. H. Riedel-Kruse, J. Howard, F. Jülicher* Journal of Experimental Biology (2010) 213, 1226. (pdf) (journal) |
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| 5 Three-dimensional extracellular recording of neuronal activity with multifunctional microelectrode arrays Du J., Riedel-Kruse, I.H., Nawroth, J.C., Laurent, G.J., Roukes, M.L., S.C. Masmanidis* J. Neurophysiol. (2009) 101: 1671. (pdf) (journal) |
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| 4 Synchrony dynamics during initiation, failure and rescue of the segmentation clock. Riedel-Kruse*, I.H., Müller, C., A.C.Oates* Science (2007) 317: 1911. (pdf) (journal) (Editors' choice) |
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| 3 How molecular motors shape the flagellar beat. Riedel-Kruse", I.H., Hilfinger", A., Howard*, J., F. Jülicher* (" equal contribution random order) HFSP Journal (2007) 1: 192. (pdf) (journal) |
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| 2 A self-organized vortex array of hydrodynamically entrained sperm cells. Riedel*, I.H., Kruse, K., J. Howard* Science (2005) 309: 300. (pdf) (journal) (Editors' choice) |
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| 1 Ab initio calculation of the transmission coefficients from a superlattice electronic structure. Riedel, I., Zahn, P., I. Mertig* Phys. Rev. B (2001) 63: 195403. (pdf) (journal) |